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ASM165925v1

Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ENVH144
BioSample:
SAMN05187232
BioProject:
PRJNA319644
Submitter:
Universitaetsklinikum Schleswig Holstein Luebeck
Date:
2016/06/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001659255.1 (latest)
RefSeq assembly accession:
GCF_001659255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LYWB01
Assembly method:
CLC Genomics Workbench v. 8.0.1
Expected final version:
yes
Genome coverage:
850.0x
Sequencing technology:
Illumina MiSeq

IDs: 754031 [UID] 3288518 [GenBank] 3294128 [RefSeq]

See Genome Information for Staphylococcus epidermidis

There are 4822 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/02/2016 11:49:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,388
CDS (total)::2,321
Genes (coding)::2,274
CDS (coding)::2,274
Genes (RNA)::67
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 23S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::10 of 47
Pseudo Genes (incomplete)::32 of 47
Pseudo Genes (internal stop)::8 of 47
Pseudo Genes (multiple problems)::2 of 47
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,499,884
Total ungapped length2,499,884
Number of contigs73
Contig N5072,273
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)73

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,499,884732,499,88472,27300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002087975.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002087975.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6493.9795.67
Best-match type99.6493.9795.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna