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ASM165185v1

Organism name:
Sinorhizobium americanum (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CFNEI 156
BioSample:
SAMN04274562
BioProject:
PRJNA302539
Submitter:
Ensifer americanum CFNEI 156T
Date:
2016/05/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001651855.1 (latest)
RefSeq assembly accession:
GCF_001651855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LNQC01
Assembly method:
SOAPdenovo v. 2.01
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 749761 [UID] 3272258 [GenBank] 3274488 [RefSeq]

See Genome Information for Sinorhizobium americanum

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/20/2015 14:38:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::6,116
CDS::5,901
Pseudo Genes::163
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::48
ncRNAs::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,653,547
Total ungapped length6,653,547
Number of contigs82
Contig N50207,808
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)82

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,653,547826,653,547207,80800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sinorhizobium americanumSinorhizobium americanum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001651865.1Sinorhizobium glycinistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.8462.8869.28

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected