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ASM164462v1

Organism name:
Listeria monocytogenes (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: FW040025
BioSample:
SAMN03579634
BioProject:
PRJNA239039
Submitter:
John Bowman
Date:
2016/05/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001644625.1 (latest)
RefSeq assembly accession:
GCF_001644625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
GS De Novo Assembler v. 2.6
Reference guided assembly:
CP006407.1
Genome coverage:
50
Sequencing technology:
Sanger dideoxy sequencing; 454

IDs: 740701 [UID] 3242788 [GenBank] 3244378 [RefSeq]

See Genome Information for Listeria monocytogenes

There are 60451 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Source strain available from submitter

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/04/2024 14:43:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,083
CDSs (total)::2,994
Genes (coding)::2,969
CDSs (with protein)::2,969
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::25
CDSs (without protein)::25
Pseudo Genes (ambiguous residues)::0 of 25
Pseudo Genes (frameshifted)::9 of 25
Pseudo Genes (incomplete)::14 of 25
Pseudo Genes (internal stop)::4 of 25
Pseudo Genes (multiple problems)::2 of 25
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,018,390
Total ungapped length3,018,390
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001644635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011345.1=NZ_CP011345.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,018,390

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Listeria monocytogenesListeria monocytogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900187225.1Listeria monocytogenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900187225.1Listeria monocytogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8493.1698.15
Best-match type98.8493.1698.15

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna