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ASM163572v1

Organism name:
Oleiphilus sp. HI0066 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: HI0066
BioSample:
SAMN04580781
BioProject:
PRJNA305749
Submitter:
Massachusetts Institute of Technology
Date:
2016/05/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001635725.1 (latest)
RefSeq assembly accession:
GCF_001635725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LWFH01
Assembly method:
MIRA v. 4.9.3
Genome coverage:
25x
Sequencing technology:
Illumina MiSeq

IDs: 733411 [UID] 3216388 [GenBank] 3408348 [RefSeq]

See Genome Information for Oleiphilus sp. HI0066

History (Show revision history)

Comment

Source DNA is available from Edward F. DeLong edelong@hawaii.edu
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/11/2016 16:25:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,809
CDS (total)::5,727
Genes (coding)::4,024
CDS (coding)::4,024
Genes (RNA)::82
rRNAs::6, 3, 4 (5S, 16S, 23S)
complete rRNAs::6, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 3 (16S, 23S)
tRNAs::59
ncRNAs::10
Pseudo Genes (total)::1,703
Pseudo Genes (ambiguous residues)::0 of 1,703
Pseudo Genes (frameshifted)::15 of 1,703
Pseudo Genes (incomplete)::1,669 of 1,703
Pseudo Genes (internal stop)::28 of 1,703
Pseudo Genes (multiple problems)::9 of 1,703
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,044,867
Total ungapped length5,044,867
Number of contigs1,887
Contig N5022,586
Contig L5055
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,887

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,044,8671,8875,044,86722,58600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oleiphilus sp. HI0066Oleiphilus sp. HI0066

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023650515.1Alkalimarinus corallitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.660.540.56

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena