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LP_J_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: LP/J
Sex:
female
BioSample:
SAMN04489826
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/05/09
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001632615.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXR01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 738491 [UID] 3227898 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 24 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,730,798,503
Total ungapped length2,296,356,226
Gaps between scaffolds0
Number of scaffolds3,499
Scaffold N50135,164,694
Scaffold L509
Number of contigs364,701
Contig N5012,608
Contig L5052,311
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)38,542

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001632625.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004256.1n/an/a0
Chromosome 2CM004257.1n/an/a0
Chromosome 3CM004258.1n/an/a0
Chromosome 4CM004259.1n/an/a0
Chromosome 5CM004260.1n/an/a0
Chromosome 6CM004261.1n/an/a0
Chromosome 7CM004262.1n/an/a0
Chromosome 8CM004263.1n/an/a0
Chromosome 9CM004264.1n/an/a0
Chromosome 10CM004265.1n/an/a0
Chromosome 11CM004266.1n/an/a0
Chromosome 12CM004267.1n/an/a0
Chromosome 13CM004268.1n/an/a0
Chromosome 14CM004269.1n/an/a0
Chromosome 15CM004270.1n/an/a0
Chromosome 16CM004271.1n/an/a0
Chromosome 17CM004272.1n/an/a0
Chromosome 18CM004273.1n/an/a0
Chromosome 19CM004274.1n/an/a0
Chromosome XCM004275.1n/an/a1
unplacedn/an/an/a3,477

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,730,782,2023,4982,296,339,925135,164,694361,2040
Chromosome 1Assembled molecule203,663,5631174,369,772203,663,56327,9750
Chromosome 2Assembled molecule188,681,1271162,927,382188,681,12723,6970
Chromosome 3Assembled molecule165,493,5361140,543,820165,493,53623,1050
Chromosome 4Assembled molecule160,599,6181134,175,375160,599,61820,5920
Chromosome 5Assembled molecule158,326,5991133,360,374158,326,59921,5900
Chromosome 6Assembled molecule154,868,3951131,792,766154,868,39519,2110
Chromosome 7Assembled molecule152,319,2591119,874,391152,319,25919,2630
Chromosome 8Assembled molecule133,211,0731114,286,604133,211,07316,9430
Chromosome 9Assembled molecule127,980,8921112,362,402127,980,89215,2360
Chromosome 10Assembled molecule135,164,6941116,338,905135,164,69417,9920
Chromosome 11Assembled molecule126,798,4381112,310,225126,798,43814,4360
Chromosome 12Assembled molecule123,003,0821101,157,592123,003,08215,5690
Chromosome 13Assembled molecule122,912,3171103,651,950122,912,31715,4130
Chromosome 14Assembled molecule123,652,9921103,254,358123,652,99216,2470
Chromosome 15Assembled molecule106,045,943192,173,705106,045,94313,5440
Chromosome 16Assembled molecule99,270,547186,836,13799,270,54713,6090
Chromosome 17Assembled molecule99,254,746183,147,61199,254,74613,6100
Chromosome 18Assembled molecule91,927,958180,738,64591,927,95811,0570
Chromosome 19Assembled molecule61,861,286153,960,27261,861,2867,1740
Chromosome XAllAssembled moleculeUnlocalized scaffolds169,734,209169,303,270430,939211124,138,389123,812,430325,959169,303,270169,303,270430,93927,09227,01973000
unplacedAssembled molecule26,011,9283,47714,939,25014,1297,8490
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,301116,30116,30100
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