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C57BL_6NJ_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: C57BL/6NJ
Sex:
female
BioSample:
SAMN04489821
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/05/09
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001632555.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXM01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 738481 [UID] 3227888 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 24 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,806,800,287
Total ungapped length2,314,857,935
Gaps between scaffolds0
Number of scaffolds3,894
Scaffold N50139,118,349
Scaffold L509
Number of contigs376,733
Contig N5012,707
Contig L5052,351
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)49,821

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001632565.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004215.1n/an/a0
Chromosome 2CM004216.1n/an/a0
Chromosome 3CM004217.1n/an/a0
Chromosome 4CM004218.1n/an/a0
Chromosome 5CM004219.1n/an/a0
Chromosome 6CM004220.1n/an/a0
Chromosome 7CM004221.1n/an/a0
Chromosome 8CM004222.1n/an/a0
Chromosome 9CM004223.1n/an/a0
Chromosome 10CM004224.1n/an/a0
Chromosome 11CM004225.1n/an/a0
Chromosome 12CM004226.1n/an/a0
Chromosome 13CM004227.1n/an/a0
Chromosome 14CM004228.1n/an/a0
Chromosome 15CM004229.1n/an/a0
Chromosome 16CM004230.1n/an/a0
Chromosome 17CM004231.1n/an/a0
Chromosome 18CM004232.1n/an/a0
Chromosome 19CM004233.1n/an/a0
Chromosome XCM004234.1n/an/a1
unplacedn/an/an/a3,872

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,806,783,9873,8932,314,841,635139,118,349372,8400
Chromosome 1Assembled molecule208,915,0051175,212,232208,915,00527,2780
Chromosome 2Assembled molecule194,112,3941163,645,758194,112,39422,8930
Chromosome 3Assembled molecule169,455,1381141,579,277169,455,13822,6910
Chromosome 4Assembled molecule166,343,6071136,424,215166,343,60722,4590
Chromosome 5Assembled molecule163,434,1041134,572,450163,434,10422,5270
Chromosome 6Assembled molecule158,845,2791132,843,185158,845,27920,3500
Chromosome 7Assembled molecule156,179,2831122,601,991156,179,28321,4380
Chromosome 8Assembled molecule137,481,3411115,316,408137,481,34116,8910
Chromosome 9Assembled molecule131,107,6611112,823,972131,107,66114,8460
Chromosome 10Assembled molecule139,118,3491117,033,502139,118,34917,8450
Chromosome 11Assembled molecule130,373,7681112,648,668130,373,76815,0750
Chromosome 12Assembled molecule126,876,9311102,798,591126,876,93117,6270
Chromosome 13Assembled molecule126,461,4541105,198,939126,461,45416,7860
Chromosome 14Assembled molecule127,425,8991104,147,381127,425,89916,4680
Chromosome 15Assembled molecule110,139,955192,798,001110,139,95516,5260
Chromosome 16Assembled molecule102,670,746187,202,434102,670,74612,4430
Chromosome 17Assembled molecule102,153,147183,995,893102,153,14713,9020
Chromosome 18Assembled molecule94,359,951180,872,77694,359,95111,1850
Chromosome 19Assembled molecule63,436,288154,145,87063,436,2887,3920
Chromosome XAllAssembled moleculeUnlocalized scaffolds173,440,394173,080,199360,195211126,383,759126,110,568273,191173,080,199173,080,199360,19528,43028,36763000
unplacedAssembled molecule24,453,2933,87212,596,3338,5187,7880
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,300116,30016,30000
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