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WSB_EiJ_v1

Organism name:
Mus musculus domesticus (western European house mouse)
Infraspecific name:
Strain: WSB/EiJ
Sex:
female
BioSample:
SAMN04489831
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624835.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXW01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731351 [UID] 3209128 [GenBank]

See Genome Information for Mus musculus

There are 24 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,689,657,557
Total ungapped length2,267,531,907
Gaps between scaffolds0
Number of scaffolds2,239
Scaffold N50133,184,209
Scaffold L509
Number of contigs372,890
Contig N5011,777
Contig L5055,450
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)72,315

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624845.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004054.1n/an/a0
Chromosome 2CM004055.1n/an/a0
Chromosome 3CM004056.1n/an/a0
Chromosome 4CM004057.1n/an/a0
Chromosome 5CM004058.1n/an/a0
Chromosome 6CM004059.1n/an/a0
Chromosome 7CM004060.1n/an/a0
Chromosome 8CM004061.1n/an/a0
Chromosome 9CM004062.1n/an/a0
Chromosome 10CM004063.1n/an/a0
Chromosome 11CM004064.1n/an/a0
Chromosome 12CM004065.1n/an/a0
Chromosome 13CM004066.1n/an/a0
Chromosome 14CM004067.1n/an/a0
Chromosome 15CM004068.1n/an/a0
Chromosome 16CM004069.1n/an/a0
Chromosome 17CM004070.1n/an/a0
Chromosome 18CM004071.1n/an/a0
Chromosome 19CM004072.1n/an/a0
Chromosome XCM004073.1n/an/a1
unplacedn/an/an/a2,217

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,689,641,2562,2382,267,515,606133,184,209370,6510
Chromosome 1Assembled molecule200,111,4531172,220,296200,111,45328,2290
Chromosome 2Assembled molecule187,258,0021161,374,770187,258,00223,9830
Chromosome 3Assembled molecule162,946,1841138,625,169162,946,18423,8440
Chromosome 4Assembled molecule158,876,4611132,279,706158,876,46121,7680
Chromosome 5Assembled molecule156,383,5681131,728,586156,383,56821,7420
Chromosome 6Assembled molecule153,513,2941130,014,723153,513,29420,3720
Chromosome 7Assembled molecule150,448,9311118,495,004150,448,93119,9640
Chromosome 8Assembled molecule132,083,1501113,341,696132,083,15017,5180
Chromosome 9Assembled molecule126,293,7911111,098,411126,293,79115,5300
Chromosome 10Assembled molecule133,184,2091115,104,977133,184,20919,3730
Chromosome 11Assembled molecule125,138,2071111,449,360125,138,20715,2500
Chromosome 12Assembled molecule122,217,858199,944,799122,217,85815,9990
Chromosome 13Assembled molecule121,644,8351102,351,346121,644,83515,9890
Chromosome 14Assembled molecule121,999,0471102,017,511121,999,04717,1320
Chromosome 15Assembled molecule105,453,600191,353,372105,453,60014,9300
Chromosome 16Assembled molecule98,561,486185,967,40898,561,48614,0050
Chromosome 17Assembled molecule98,399,941181,904,37398,399,94113,8580
Chromosome 18Assembled molecule90,698,425179,868,14090,698,42511,5540
Chromosome 19Assembled molecule61,113,421153,601,78861,113,4217,5920
Chromosome XAllAssembled moleculeUnlocalized scaffolds165,901,008165,505,871395,137211121,510,955121,203,311307,644165,505,871165,505,871395,13727,92627,85274000
unplacedAssembled molecule17,414,3852,21713,263,21617,3084,0930
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,301116,30116,30100
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