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PWK_PhJ_v1

Organism name:
Mus musculus musculus (eastern European house mouse)
Infraspecific name:
Strain: PWK/PhJ
Sex:
female
BioSample:
SAMN04489829
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624775.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXU01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731331 [UID] 3209108 [GenBank]

See Genome Information for Mus musculus

There are 24 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,559,987,392
Total ungapped length2,323,507,398
Gaps between scaffolds0
Number of scaffolds3,140
Scaffold N50128,387,505
Scaffold L509
Number of contigs832,630
Contig N505,105
Contig L50134,096
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)30,233

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624785.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004114.1n/an/a0
Chromosome 2CM004115.1n/an/a0
Chromosome 3CM004116.1n/an/a0
Chromosome 4CM004117.1n/an/a1
Chromosome 5CM004118.1n/an/a0
Chromosome 6CM004119.1n/an/a0
Chromosome 7CM004120.1n/an/a0
Chromosome 8CM004121.1n/an/a0
Chromosome 9CM004122.1n/an/a0
Chromosome 10CM004123.1n/an/a0
Chromosome 11CM004124.1n/an/a0
Chromosome 12CM004125.1n/an/a0
Chromosome 13CM004126.1n/an/a0
Chromosome 14CM004127.1n/an/a0
Chromosome 15CM004128.1n/an/a0
Chromosome 16CM004129.1n/an/a0
Chromosome 17CM004130.1n/an/a0
Chromosome 18CM004131.1n/an/a0
Chromosome 19CM004132.1n/an/a0
Chromosome XCM004133.1n/an/a1
unplacedn/an/an/a3,117

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,559,971,0913,1392,323,491,097128,387,505829,4900
Chromosome 1Assembled molecule192,210,2631175,979,757192,210,26362,2180
Chromosome 2Assembled molecule177,611,9561164,245,492177,611,95653,3150
Chromosome 3Assembled molecule157,093,6441142,527,633157,093,64451,1810
Chromosome 4AllAssembled moleculeUnlocalized scaffolds150,102,330150,041,07561,255211135,764,590135,730,29134,299150,041,075150,041,07561,25548,88448,84341000
Chromosome 5Assembled molecule149,733,6171135,097,437149,733,61749,0330
Chromosome 6Assembled molecule145,926,3821132,623,442145,926,38245,4480
Chromosome 7Assembled molecule137,676,6561121,542,654137,676,65644,1350
Chromosome 8Assembled molecule126,682,4001115,978,183126,682,40039,2950
Chromosome 9Assembled molecule122,369,4001113,677,583122,369,40036,1840
Chromosome 10Assembled molecule128,387,5051117,700,056128,387,50541,3660
Chromosome 11Assembled molecule121,682,0561113,658,496121,682,05637,1070
Chromosome 12Assembled molecule112,624,1211102,663,774112,624,12135,5970
Chromosome 13Assembled molecule116,378,8431104,985,807116,378,84336,4680
Chromosome 14Assembled molecule114,823,3111104,099,197114,823,31136,6500
Chromosome 15Assembled molecule101,373,890193,315,821101,373,89032,0590
Chromosome 16Assembled molecule95,237,791187,792,69195,237,79129,9600
Chromosome 17Assembled molecule93,366,003183,927,48593,366,00331,4650
Chromosome 18Assembled molecule87,765,609181,542,36387,765,60926,3590
Chromosome 19Assembled molecule58,736,448154,501,80358,736,44817,6260
Chromosome XAllAssembled moleculeUnlocalized scaffolds144,595,602144,071,085524,517211126,750,423126,299,772450,651144,071,085144,071,085524,51757,38857,059329000
unplacedAssembled molecule25,593,2643,11715,116,41011,49417,7520
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,301116,30116,30100
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