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NZO_HlLtJ_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: NZO/HiLtJ
Sex:
female
BioSample:
SAMN04489828
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624745.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXT01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731321 [UID] 3209098 [GenBank]

See Genome Information for Mus musculus

There are 24 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,699,267,296
Total ungapped length2,332,925,254
Gaps between scaffolds0
Number of scaffolds7,022
Scaffold N50132,960,827
Scaffold L509
Number of contigs294,115
Contig N5016,509
Contig L5041,198
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)57,439

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004154.1n/an/a0
Chromosome 2CM004155.1n/an/a0
Chromosome 3CM004156.1n/an/a0
Chromosome 4CM004157.1n/an/a0
Chromosome 5CM004158.1n/an/a0
Chromosome 6CM004159.1n/an/a0
Chromosome 7CM004160.1n/an/a0
Chromosome 8CM004161.1n/an/a0
Chromosome 9CM004162.1n/an/a0
Chromosome 10CM004163.1n/an/a0
Chromosome 11CM004164.1n/an/a0
Chromosome 12CM004165.1n/an/a0
Chromosome 13CM004166.1n/an/a0
Chromosome 14CM004167.1n/an/a0
Chromosome 15CM004168.1n/an/a0
Chromosome 16CM004169.1n/an/a0
Chromosome 17CM004170.1n/an/a0
Chromosome 18CM004171.1n/an/a0
Chromosome 19CM004172.1n/an/a0
Chromosome XCM004173.1n/an/a1
unplacedn/an/an/a7,000

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,699,250,9947,0212,332,908,952132,960,827287,0930
Chromosome 1Assembled molecule199,802,1051176,150,485199,802,10521,1760
Chromosome 2Assembled molecule186,288,5771164,329,755186,288,57717,6220
Chromosome 3Assembled molecule161,983,4441142,189,183161,983,44417,2930
Chromosome 4Assembled molecule158,689,4311136,789,971158,689,43117,4760
Chromosome 5Assembled molecule155,582,8371134,724,057155,582,83716,5950
Chromosome 6Assembled molecule152,924,5851133,714,416152,924,58515,7780
Chromosome 7Assembled molecule149,455,3651121,616,269149,455,36515,7240
Chromosome 8Assembled molecule131,491,0141115,528,015131,491,01413,4650
Chromosome 9Assembled molecule126,428,1611113,346,720126,428,16112,0880
Chromosome 10Assembled molecule132,960,8271117,501,134132,960,82713,8040
Chromosome 11Assembled molecule125,167,3911113,300,740125,167,39112,2680
Chromosome 12Assembled molecule121,243,0221102,456,028121,243,02211,9500
Chromosome 13Assembled molecule120,980,5271105,232,921120,980,52712,4330
Chromosome 14Assembled molecule121,280,3201104,416,449121,280,32012,2000
Chromosome 15Assembled molecule104,829,559193,001,608104,829,55910,7210
Chromosome 16Assembled molecule98,229,844187,656,74298,229,84410,0560
Chromosome 17Assembled molecule97,461,815184,283,89697,461,81511,0280
Chromosome 18Assembled molecule90,840,666181,378,08290,840,6668,7790
Chromosome 19Assembled molecule61,044,444154,446,15361,044,4445,9920
Chromosome XAllAssembled moleculeUnlocalized scaffolds168,050,928167,695,249355,679211127,000,573126,710,014290,559167,695,249167,695,249355,67921,22621,18541000
unplacedAssembled molecule34,516,1327,00023,845,7555,4439,4190
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,302116,30216,30200
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