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FVB_NJ_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: FVB/NJ
Sex:
female
BioSample:
SAMN04489825
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624535.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXQ01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731301 [UID] 3209078 [GenBank]

See Genome Information for Mus musculus

There are 24 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,588,619,290
Total ungapped length2,312,830,793
Gaps between scaffolds0
Number of scaffolds5,013
Scaffold N50127,063,089
Scaffold L509
Number of contigs302,598
Contig N5015,797
Contig L5042,624
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)67,805

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624545.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004074.1n/an/a0
Chromosome 2CM004075.1n/an/a0
Chromosome 3CM004076.1n/an/a0
Chromosome 4CM004077.1n/an/a0
Chromosome 5CM004078.1n/an/a0
Chromosome 6CM004079.1n/an/a0
Chromosome 7CM004080.1n/an/a0
Chromosome 8CM004081.1n/an/a0
Chromosome 9CM004082.1n/an/a0
Chromosome 10CM004083.1n/an/a0
Chromosome 11CM004084.1n/an/a0
Chromosome 12CM004085.1n/an/a0
Chromosome 13CM004086.1n/an/a0
Chromosome 14CM004087.1n/an/a0
Chromosome 15CM004088.1n/an/a0
Chromosome 16CM004089.1n/an/a0
Chromosome 17CM004090.1n/an/a0
Chromosome 18CM004091.1n/an/a0
Chromosome 19CM004092.1n/an/a0
Chromosome XCM004093.1n/an/a1
unplacedn/an/an/a4,991

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,588,602,9905,0122,312,814,493127,063,089297,5850
Chromosome 1Assembled molecule191,003,9941175,127,887191,003,99421,5700
Chromosome 2Assembled molecule178,613,8111163,410,090178,613,81118,0000
Chromosome 3Assembled molecule154,524,0891141,395,261154,524,08917,1720
Chromosome 4Assembled molecule153,142,5371135,039,703153,142,53716,9700
Chromosome 5Assembled molecule149,830,5731133,697,355149,830,57317,5850
Chromosome 6Assembled molecule146,067,0481132,116,161146,067,04815,4850
Chromosome 7Assembled molecule144,302,7391120,733,028144,302,73916,0980
Chromosome 8Assembled molecule125,894,3431114,258,486125,894,34313,3160
Chromosome 9Assembled molecule121,137,7801112,780,424121,137,78012,0270
Chromosome 10Assembled molecule127,063,0891116,902,991127,063,08914,1410
Chromosome 11Assembled molecule119,953,2281112,614,992119,953,22812,3740
Chromosome 12Assembled molecule116,519,2781101,968,075116,519,27812,4080
Chromosome 13Assembled molecule115,992,3991104,256,409115,992,39912,5620
Chromosome 14Assembled molecule116,117,1901103,664,198116,117,19012,5460
Chromosome 15Assembled molecule100,039,116192,602,634100,039,11611,1130
Chromosome 16Assembled molecule93,772,560187,053,41893,772,56010,1510
Chromosome 17Assembled molecule93,135,232183,290,56493,135,23211,0500
Chromosome 18Assembled molecule86,730,722180,893,51186,730,7228,6350
Chromosome 19Assembled molecule58,385,972154,207,74458,385,9726,0050
Chromosome XAllAssembled moleculeUnlocalized scaffolds165,572,706165,222,886349,820211121,784,179121,508,537275,642165,222,886165,222,886349,82030,33530,26669000
unplacedAssembled molecule30,804,5844,99125,017,3839,2558,0420
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,300116,30016,30000
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