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DBA_2J_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: DBA/2J
Sex:
female
BioSample:
SAMN04489824
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624505.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXP01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731291 [UID] 3209068 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 37 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,606,162,158
Total ungapped length2,309,411,114
Gaps between scaffolds0
Number of scaffolds4,105
Scaffold N50128,213,663
Scaffold L509
Number of contigs368,025
Contig N5013,123
Contig L5049,605
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)42,324

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624515.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004034.1n/an/a0
Chromosome 2CM004035.1n/an/a0
Chromosome 3CM004036.1n/an/a0
Chromosome 4CM004037.1n/an/a0
Chromosome 5CM004038.1n/an/a0
Chromosome 6CM004039.1n/an/a0
Chromosome 7CM004040.1n/an/a0
Chromosome 8CM004041.1n/an/a0
Chromosome 9CM004042.1n/an/a0
Chromosome 10CM004043.1n/an/a0
Chromosome 11CM004044.1n/an/a0
Chromosome 12CM004045.1n/an/a0
Chromosome 13CM004046.1n/an/a0
Chromosome 14CM004047.1n/an/a0
Chromosome 15CM004048.1n/an/a0
Chromosome 16CM004049.1n/an/a0
Chromosome 17CM004050.1n/an/a0
Chromosome 18CM004051.1n/an/a0
Chromosome 19CM004052.1n/an/a0
Chromosome XCM004053.1n/an/a1
unplacedn/an/an/a4,083

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,606,145,8584,1042,309,394,814128,213,663363,9200
Chromosome 1Assembled molecule192,928,1091174,950,839192,928,10928,1110
Chromosome 2Assembled molecule179,964,7091163,314,048179,964,70922,4340
Chromosome 3Assembled molecule157,190,4531140,823,319157,190,45323,1730
Chromosome 4Assembled molecule153,890,1231134,992,393153,890,12320,8660
Chromosome 5Assembled molecule150,592,9471133,604,174150,592,94721,5870
Chromosome 6Assembled molecule147,407,7111131,975,072147,407,71119,3990
Chromosome 7Assembled molecule144,344,0071120,641,368144,344,00718,8710
Chromosome 8Assembled molecule126,593,5611114,791,449126,593,56116,8060
Chromosome 9Assembled molecule122,266,2281112,916,304122,266,22814,9970
Chromosome 10Assembled molecule128,213,6631116,725,535128,213,66318,1480
Chromosome 11Assembled molecule120,239,5941112,585,786120,239,59415,0520
Chromosome 12Assembled molecule117,921,3641101,542,410117,921,36415,7380
Chromosome 13Assembled molecule117,427,4901104,386,139117,427,49015,5770
Chromosome 14Assembled molecule117,845,5511103,947,083117,845,55117,1180
Chromosome 15Assembled molecule101,173,774192,617,956101,173,77414,4540
Chromosome 16Assembled molecule94,787,448186,959,11994,787,44813,1760
Chromosome 17Assembled molecule93,736,615183,264,21993,736,61513,2010
Chromosome 18Assembled molecule87,488,644180,684,93187,488,64411,1970
Chromosome 19Assembled molecule58,689,003154,138,18558,689,0037,1190
Chromosome XAllAssembled moleculeUnlocalized scaffolds166,451,966166,092,115359,851211124,989,380124,688,140301,240166,092,115166,092,115359,85127,81527,73976000
unplacedAssembled molecule26,992,8984,08319,545,1059,7369,0810
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,300116,30016,30000
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