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AKR_J_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: AKR/J
Sex:
female
BioSample:
SAMN04489815
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624295.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXJ01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731261 [UID] 3209038 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 24 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,712,707,555
Total ungapped length2,354,252,684
Gaps between scaffolds0
Number of scaffolds5,953
Scaffold N50132,982,296
Scaffold L509
Number of contigs242,285
Contig N5023,042
Contig L5029,369
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)40,550

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624305.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003974.1n/an/a0
Chromosome 2CM003975.1n/an/a0
Chromosome 3CM003976.1n/an/a0
Chromosome 4CM003977.1n/an/a0
Chromosome 5CM003978.1n/an/a0
Chromosome 6CM003979.1n/an/a0
Chromosome 7CM003980.1n/an/a0
Chromosome 8CM003981.1n/an/a0
Chromosome 9CM003982.1n/an/a0
Chromosome 10CM003983.1n/an/a0
Chromosome 11CM003984.1n/an/a0
Chromosome 12CM003985.1n/an/a0
Chromosome 13CM003986.1n/an/a0
Chromosome 14CM003987.1n/an/a0
Chromosome 15CM003988.1n/an/a0
Chromosome 16CM003989.1n/an/a0
Chromosome 17CM003990.1n/an/a0
Chromosome 18CM003991.1n/an/a0
Chromosome 19CM003992.1n/an/a0
Chromosome XCM003993.1n/an/a1
unplacedn/an/an/a5,931

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,712,691,2545,9522,354,236,383132,982,296236,3320
Chromosome 1Assembled molecule199,989,1261178,219,013199,989,12617,0170
Chromosome 2Assembled molecule186,275,5791165,945,299186,275,57914,3640
Chromosome 3Assembled molecule162,353,7521143,929,545162,353,75213,4670
Chromosome 4Assembled molecule158,068,4191136,791,960158,068,41913,5750
Chromosome 5Assembled molecule155,601,8601135,580,531155,601,86013,7620
Chromosome 6Assembled molecule153,041,2121134,617,061153,041,21212,4070
Chromosome 7Assembled molecule150,494,9291122,531,561150,494,92913,1370
Chromosome 8Assembled molecule131,346,7521116,581,345131,346,75210,7010
Chromosome 9Assembled molecule126,111,9371114,286,194126,111,9379,4300
Chromosome 10Assembled molecule132,982,2961118,625,187132,982,29611,0500
Chromosome 11Assembled molecule124,531,8321113,810,696124,531,8329,4310
Chromosome 12Assembled molecule122,086,4601103,591,684122,086,4609,5520
Chromosome 13Assembled molecule121,418,2851105,910,824121,418,28510,0310
Chromosome 14Assembled molecule121,817,0921105,934,776121,817,0929,5940
Chromosome 15Assembled molecule105,200,566194,488,838105,200,5668,2220
Chromosome 16Assembled molecule97,838,949188,594,54997,838,9497,2540
Chromosome 17Assembled molecule96,871,111184,606,74696,871,1118,8260
Chromosome 18Assembled molecule90,485,720182,076,50190,485,7206,7100
Chromosome 19Assembled molecule60,761,316154,511,95560,761,3164,6230
Chromosome XAllAssembled moleculeUnlocalized scaffolds173,121,568172,655,194466,374211127,424,987127,046,986378,001172,655,194172,655,194466,37421,94121,89051000
unplacedAssembled molecule42,292,4935,93126,177,13110,93811,2380
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,301116,30116,30100
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