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A_J_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: A/J
Sex:
female
BioSample:
SAMN04489813
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624215.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXI01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731251 [UID] 3209028 [GenBank]

See Genome Information for Mus musculus

There are 24 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,629,995,394
Total ungapped length2,348,553,846
Gaps between scaffolds0
Number of scaffolds4,688
Scaffold N50129,072,804
Scaffold L509
Number of contigs306,830
Contig N5019,043
Contig L5034,118
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)33,692

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624225.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003954.1n/an/a0
Chromosome 2CM003955.1n/an/a0
Chromosome 3CM003956.1n/an/a0
Chromosome 4CM003957.1n/an/a0
Chromosome 5CM003958.1n/an/a0
Chromosome 6CM003959.1n/an/a0
Chromosome 7CM003960.1n/an/a0
Chromosome 8CM003961.1n/an/a0
Chromosome 9CM003962.1n/an/a0
Chromosome 10CM003963.1n/an/a0
Chromosome 11CM003964.1n/an/a0
Chromosome 12CM003965.1n/an/a0
Chromosome 13CM003966.1n/an/a0
Chromosome 14CM003967.1n/an/a0
Chromosome 15CM003968.1n/an/a0
Chromosome 16CM003969.1n/an/a0
Chromosome 17CM003970.1n/an/a0
Chromosome 18CM003971.1n/an/a0
Chromosome 19CM003972.1n/an/a0
Chromosome XCM003973.1n/an/a1
unplacedn/an/an/a4,666

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,629,979,0944,6872,348,537,546129,072,804302,1420
Chromosome 1Assembled molecule194,203,6101177,633,135194,203,61021,0510
Chromosome 2Assembled molecule180,857,4411165,586,582180,857,44119,0540
Chromosome 3Assembled molecule158,176,1221143,583,682158,176,12218,9550
Chromosome 4Assembled molecule153,877,8111136,638,895153,877,81116,9190
Chromosome 5Assembled molecule150,967,5521135,321,608150,967,55216,6850
Chromosome 6Assembled molecule148,608,7961134,462,823148,608,79616,3240
Chromosome 7Assembled molecule146,384,8981122,680,664146,384,89815,1110
Chromosome 8Assembled molecule127,404,5601116,390,177127,404,56013,2940
Chromosome 9Assembled molecule122,757,2931114,000,278122,757,29314,0120
Chromosome 10Assembled molecule129,072,8041118,601,835129,072,80414,5550
Chromosome 11Assembled molecule120,841,7441113,643,681120,841,74411,2400
Chromosome 12Assembled molecule118,520,6771103,307,976118,520,67711,7990
Chromosome 13Assembled molecule117,951,9521105,595,679117,951,95213,2900
Chromosome 14Assembled molecule118,015,9761105,435,602118,015,97611,5500
Chromosome 15Assembled molecule101,712,559193,921,998101,712,55910,3190
Chromosome 16Assembled molecule94,837,082188,304,94994,837,0829,7310
Chromosome 17Assembled molecule95,372,427184,664,39595,372,42711,5430
Chromosome 18Assembled molecule87,844,128181,934,76387,844,1288,9000
Chromosome 19Assembled molecule58,952,666154,727,82958,952,6665,9150
Chromosome XAllAssembled moleculeUnlocalized scaffolds167,718,296167,312,163406,133211127,078,241126,737,094341,147167,312,163167,312,163406,13330,43830,37167000
unplacedAssembled molecule35,900,7004,66625,022,75414,17911,4570
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,300116,30016,30000
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