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129S1_SvImJ_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: 129S1/SvImJ
Sex:
female
BioSample:
SAMN04489811
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624185.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXH01
Assembly method:
SGA v. 0.9.19; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731241 [UID] 3209018 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 24 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,732,673,693
Total ungapped length2,321,623,672
Gaps between scaffolds0
Number of scaffolds7,154
Scaffold N50134,541,008
Scaffold L509
Number of contigs327,878
Contig N5014,243
Contig L5047,138
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)62,882

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624195.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003934.1n/an/a0
Chromosome 2CM003935.1n/an/a0
Chromosome 3CM003936.1n/an/a0
Chromosome 4CM003937.1n/an/a0
Chromosome 5CM003938.1n/an/a0
Chromosome 6CM003939.1n/an/a0
Chromosome 7CM003940.1n/an/a0
Chromosome 8CM003941.1n/an/a0
Chromosome 9CM003942.1n/an/a0
Chromosome 10CM003943.1n/an/a0
Chromosome 11CM003944.1n/an/a0
Chromosome 12CM003945.1n/an/a0
Chromosome 13CM003946.1n/an/a0
Chromosome 14CM003947.1n/an/a0
Chromosome 15CM003948.1n/an/a0
Chromosome 16CM003949.1n/an/a0
Chromosome 17CM003950.1n/an/a0
Chromosome 18CM003951.1n/an/a0
Chromosome 19CM003952.1n/an/a0
Chromosome XCM003953.1n/an/a1
unplacedn/an/an/a7,132

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,732,657,3937,1532,321,607,372134,541,008320,7240
Chromosome 1Assembled molecule202,555,6451175,262,626202,555,64524,5570
Chromosome 2Assembled molecule188,650,3601163,768,555188,650,36020,1720
Chromosome 3Assembled molecule164,074,4391141,266,148164,074,43920,0700
Chromosome 4Assembled molecule160,637,2121135,383,174160,637,21218,8190
Chromosome 5Assembled molecule157,702,8681133,694,260157,702,86818,3390
Chromosome 6Assembled molecule154,738,7801133,124,283154,738,78017,4930
Chromosome 7Assembled molecule150,760,0481120,783,192150,760,04816,5050
Chromosome 8Assembled molecule133,061,6151114,938,706133,061,61515,0980
Chromosome 9Assembled molecule127,707,8421112,993,863127,707,84213,2870
Chromosome 10Assembled molecule134,541,0081116,911,992134,541,00816,0580
Chromosome 11Assembled molecule126,530,0871112,924,039126,530,08713,0920
Chromosome 12Assembled molecule123,023,8181101,571,713123,023,81813,6150
Chromosome 13Assembled molecule122,846,1221104,824,953122,846,12214,2610
Chromosome 14Assembled molecule122,711,0831104,270,033122,711,08314,7510
Chromosome 15Assembled molecule105,905,879192,862,583105,905,87912,4100
Chromosome 16Assembled molecule99,474,567187,343,11099,474,56711,7350
Chromosome 17Assembled molecule98,486,392183,716,42198,486,39212,1060
Chromosome 18Assembled molecule91,967,984181,080,94291,967,9849,8110
Chromosome 19Assembled molecule61,997,021154,096,75761,997,0216,5110
Chromosome XAllAssembled moleculeUnlocalized scaffolds168,537,408168,184,958352,450211124,611,718124,316,813294,905168,184,958168,184,958352,45022,96522,90659000
unplacedAssembled molecule36,747,2157,13226,178,3045,8969,0690
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,300116,30016,30000
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