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Source database (GenBank or RefSeq) File type

ASM160604v1

Organism name:: Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: N17-1
BioSample:: SAMN03145716
BioProject:: PRJNA265138
Submitter:: Institute of Agro-products Processing Science and Technology, Chinese Academy of Agricultural Sciences
Date:: 2016/04/04
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_001606045.1 (latest)
RefSeq assembly accession:: GCF_001606045.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SOAPdenovo v. 2.04
Genome coverage:: 200X
Sequencing technology:: Illumina

IDs: 713831 [UID] 3155228 [GenBank] 3174738 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

Pathogen Detection Resources

There are 30231 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001606045.1	=	GCF_001606045.1	ASM160604v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 10:09:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,932
CDSs (total)::5,852
Genes (coding)::5,815
CDSs (with protein)::5,815
Genes (RNA)::80
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::37
CDSs (without protein)::37
Pseudo Genes (ambiguous residues)::0 of 37
Pseudo Genes (frameshifted)::17 of 37
Pseudo Genes (incomplete)::25 of 37
Pseudo Genes (internal stop)::4 of 37
Pseudo Genes (multiple problems)::7 of 37
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,370,730
Total ungapped length	6,370,730
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.58	96.11	98.61
Best-match type	99.58	96.11	98.61

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ASM160604v1

See Genome Information for Pseudomonas aeruginosa

Pathogen Detection Resources

There are 30231 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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