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ASM159728v1

Organism name:
Pseudomonas alcaligenes (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NEB 585
BioSample:
SAMN04539664
BioProject:
PRJNA314705
Submitter:
New England Biolabs, Inc.
Date:
2016/03/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001597285.1 (latest)
RefSeq assembly accession:
GCF_001597285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Genome coverage:
382x
Sequencing technology:
PacBio

IDs: 709011 [UID] 3134578 [GenBank] 3135768 [RefSeq]

See Genome Information for Pseudomonas alcaligenes

There are 19 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/05/2020 03:06:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,164
CDSs (total)::4,091
Genes (coding)::4,072
CDSs (with protein)::4,072
Genes (RNA)::73
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::59
ncRNAs::5
Pseudo Genes (total)::19
CDSs (without protein)::19
Pseudo Genes (ambiguous residues)::0 of 19
Pseudo Genes (frameshifted)::5 of 19
Pseudo Genes (incomplete)::14 of 19
Pseudo Genes (internal stop)::2 of 19
Pseudo Genes (multiple problems)::1 of 19
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,406,305
Total ungapped length4,406,305
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001597295.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014784.1=NZ_CP014784.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,406,305

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas alcaligenesPseudomonas alcaligenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900455475.1Pseudomonas alcaligenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900455475.1Pseudomonas alcaligenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.8287.4576.81
Best-match type96.8287.4576.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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