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ASM159607v2

Organism name:
Klebsiella quasipneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:700603
Infraspecific name:
Strain: ATCC 700603
Isolate:
K6
BioSample:
SAMN04382091
BioProject:
PRJNA307517
Submitter:
The Unniversity of Queensland
Date:
2016/11/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001596075.2 (latest)
RefSeq assembly accession:
GCF_001596075.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. May 2015
Genome coverage:
380x
Sequencing technology:
PacBio

IDs: 899181 [UID] 3754648 [GenBank] 3821368 [RefSeq]

See Genome Information for Klebsiella quasipneumoniae

There are 2052 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 14:40:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,424
CDSs (total)::5,303
Genes (coding)::5,159
CDSs (with protein)::5,159
Genes (RNA)::121
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::86
ncRNAs::10
Pseudo Genes (total)::144
CDSs (without protein)::144
Pseudo Genes (ambiguous residues)::0 of 144
Pseudo Genes (frameshifted)::63 of 144
Pseudo Genes (incomplete)::79 of 144
Pseudo Genes (internal stop)::28 of 144
Pseudo Genes (multiple problems)::19 of 144
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,513,862
Total ungapped length5,513,862
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001596085.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014696.2=NZ_CP014696.2
Plasmid pKQPS1CP014697.2=NZ_CP014697.2
Plasmid pKQPS2CP014698.2=NZ_CP014698.2

Assembly statistics

MoleculeTotal
Length
All5,513,862
Chromosome 5,284,734
Plasmid pKQPS1152,001
Plasmid pKQPS277,127

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella quasipneumoniaeKlebsiella quasipneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020525685.1Klebsiella quasipneumoniae subsp. similipneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020525685.1Klebsiella quasipneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3690.5796.22
Best-match type99.3690.5796.22

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna