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ASM158625v1

Organism name:
Zhongshania aliphaticivorans (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SM-2
BioSample:
SAMN04361929
BioProject:
PRJNA306719
Submitter:
Chung-Ang University
Date:
2016/03/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001586255.1 (latest)
RefSeq assembly accession:
GCF_001586255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP3 v. December-2015
Expected final version:
yes
Genome coverage:
198.0x
Sequencing technology:
PacBio

IDs: 659561 [UID] 2942638 [GenBank] 3139858 [RefSeq]

See Genome Information for Zhongshania aliphaticivorans

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/13/2020 01:45:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,760
CDSs (total)::3,704
Genes (coding)::3,680
CDSs (with protein)::3,680
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::24
CDSs (without protein)::24
Pseudo Genes (ambiguous residues)::0 of 24
Pseudo Genes (frameshifted)::7 of 24
Pseudo Genes (incomplete)::15 of 24
Pseudo Genes (internal stop)::5 of 24
Pseudo Genes (multiple problems)::3 of 24
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,204,359
Total ungapped length4,204,359
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001586265.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014544.1=NZ_CP014544.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,204,359

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Zhongshania aliphaticivoransZhongshania aliphaticivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014898265.1Zhongshania antarcticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.1975.4582.37

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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