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ASM158084v1

Organism name:
Gluconobacter albidus (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 1356
BioSample:
SAMN03799284
BioProject:
PRJNA288385
Submitter:
Ghent University
Date:
2016/03/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001580845.1 (latest)
RefSeq assembly accession:
GCF_001580845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LHZN01
Assembly method:
CLC genomic workbench v. 7
Expected final version:
yes
Genome coverage:
125.0x
Sequencing technology:
Illumina HiSeq

IDs: 656661 [UID] 2932438 [GenBank] 3136978 [RefSeq]

See Genome Information for Gluconobacter albidus

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2015 12:26:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,059
CDS::2,914
Pseudo Genes::94
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::47
ncRNA::1
Frameshifted Genes::22
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,270,193
Total ungapped length3,270,193
Number of contigs146
Contig N5060,557
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)146

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,270,1931463,270,19360,55700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gluconobacter albidusGluconobacter albidus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002723915.1Gluconobacter albidustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002723915.1Gluconobacter albidustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8499.18
Best-match type99.9999.8499.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna