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ASM157467v1

Organism name:
Francisella tularensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NO-18/2011
BioSample:
SAMN02870492
BioProject:
PRJNA253522
Submitter:
Swedish Defence Research Agency
Date:
2016/02/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001574675.1 (latest)
RefSeq assembly accession:
GCF_001574675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JPMS01
Assembly method:
ABySS v. 1.3.5
Expected final version:
no
Genome coverage:
850.0x
Sequencing technology:
Illumina HiSeq

IDs: 649071 [UID] 2899348 [GenBank] 2906758 [RefSeq]

See Genome Information for Francisella tularensis

There are 1090 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/21/2014 17:44:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.6 (rev. 440435)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::1,969
CDS::1,757
Pseudo Genes::153
rRNAs::16 (5S, 16S, 23S)
tRNAs::42
ncRNA::1
Frameshifted Genes::117
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,866,719
Total ungapped length1,866,719
Number of contigs95
Contig N5027,867
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)95

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,866,719951,866,71927,86700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Francisella tularensisFrancisella tularensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000153845.1Francisella tularensis subsp. holarctica 257type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000153845.1Francisella tularensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9197.5796.56
Best-match type99.9197.5796.56

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna