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ASM157332v1

Organism name:
Clostridium botulinum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Hall 183
BioSample:
SAMN03779957
BioProject:
PRJNA286797
Submitter:
Northern Arizona University
Date:
2016/02/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001573325.1 (latest)
RefSeq assembly accession:
GCF_001573325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LFOP01
Assembly method:
SPAdes v. 3.0.0
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina GAIIx

IDs: 648401 [UID] 2896888 [GenBank] 2904998 [RefSeq]

See Genome Information for Clostridium botulinum

There are 1430 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,002,127
Total ungapped length4,002,127
Number of contigs99
Contig N5078,163
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)99

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,002,127994,002,12778,16300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium botulinumClostridium botulinum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001276985.1Clostridium botulinumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001276985.1Clostridium botulinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7887.0489.57
Best-match type97.7887.0489.57

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna