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ASM157084v1

Organism name:
Dietzia papillomatosis NBRC 105045 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NBRC 105045
BioSample:
SAMD00046476
BioProject:
PRJDB1348
Submitter:
National Institute of Technology and Evaluation
Date:
2016/02/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001570845.1 (latest)
RefSeq assembly accession:
GCF_001570845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BCSL01
Assembly method:
newbler v. 3.0
Genome coverage:
105x
Sequencing technology:
Illumina HiSeq 1000

IDs: 647141 [UID] 2892978 [GenBank] 3135988 [RefSeq]

See Genome Information for Dietzia papillomatosis

History (Show revision history)

Comment



Strain NBRC 105045 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length3,486,774
Total ungapped length3,486,774
Number of contigs134
Contig N5071,150
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)134

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,486,7741343,486,77471,15000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dietzia papillomatosis NBRC 105045Dietzia papillomatosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001571065.1Dietzia cinnameasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.1189.8187.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material