U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM155923v2

Organism name:
Citrobacter sp. FDAARGOS_156 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: FDA:FDAARGOS_155
Infraspecific name:
Strain: FDAARGOS_155
BioSample:
SAMN03996300
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2018/02/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001559235.2 (latest)
RefSeq assembly accession:
GCF_001559235.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP3 v. Oct 2014
Genome coverage:
384.64x
Sequencing technology:
PacBio; Illumina

IDs: 1612711 [UID] 6151878 [GenBank] 6185338 [RefSeq]

See Genome Information for Citrobacter sp. FDAARGOS_156

There are 12 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2024 04:02:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,531
CDSs (total)::4,413
Genes (coding)::4,334
CDSs (with protein)::4,334
Genes (RNA)::118
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::10
Pseudo Genes (total)::79
CDSs (without protein)::79
Pseudo Genes (ambiguous residues)::0 of 79
Pseudo Genes (frameshifted)::33 of 79
Pseudo Genes (incomplete)::49 of 79
Pseudo Genes (internal stop)::21 of 79
Pseudo Genes (multiple problems)::21 of 79
Pseudo Genes (short protein)::1 of 79
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,727,498
Total ungapped length4,727,498
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001559245.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014030.2=NZ_CP014030.2

Assembly statistics

MoleculeTotal
Length
Chromosome 4,727,498

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citrobacter sp. FDAARGOS_156Citrobacter sp. FDAARGOS_156

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900638065.1Citrobacter youngaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.4693.7891.09

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna