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ASM155514v1

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AU6923
BioSample:
SAMN04436472
BioProject:
PRJNA309533
Submitter:
University of Michigan
Date:
2016/02/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001555145.1 (latest)
RefSeq assembly accession:
GCF_001555145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LRYO01
Assembly method:
SPAdes v. 3.5.0
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Illumina HiSeq

IDs: 638931 [UID] 2869728 [GenBank] 2898528 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30231 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/03/2016 15:45:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,121
CDS (total)::6,056
Genes (coding)::5,903
CDS (coding)::5,903
Genes (RNA)::65
rRNAs::4 (5S)
complete rRNAs::2 (5S)
partial rRNAs::2 (5S)
tRNAs::56
ncRNAs::5
Pseudo Genes (total)::153
Pseudo Genes (ambiguous residues)::0 of 153
Pseudo Genes (frameshifted)::68 of 153
Pseudo Genes (incomplete)::77 of 153
Pseudo Genes (internal stop)::10 of 153
Pseudo Genes (multiple problems)::2 of 153
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,490,208
Total ungapped length6,490,208
Number of contigs57
Contig N50233,457
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,490,208576,490,208233,45700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008801675.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008801675.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4088.9689.88
Best-match type99.4088.9689.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna