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ASM154330v1

Organism name:
Liberibacter crescens (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BT-0
BioSample:
SAMN03256334
BioProject:
PRJNA269727
Submitter:
University of Florida
Date:
2016/02/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001543305.1 (latest)
RefSeq assembly accession:
GCF_001543305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT analysis v. 2.2.0 HGAP Assembly 3
Genome coverage:
263x
Sequencing technology:
Pacific Biosciences SMRT system

IDs: 633151 [UID] 2853888 [GenBank] 2854668 [RefSeq]

See Genome Information for Liberibacter crescens

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/04/2020 20:56:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,379
CDSs (total)::1,317
Genes (coding)::1,304
CDSs (with protein)::1,304
Genes (RNA)::62
rRNAs::3, 3, 4 (5S, 16S, 23S)
complete rRNAs::3, 3, 4 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::13
CDSs (without protein)::13
Pseudo Genes (ambiguous residues)::0 of 13
Pseudo Genes (frameshifted)::7 of 13
Pseudo Genes (incomplete)::7 of 13
Pseudo Genes (internal stop)::4 of 13
Pseudo Genes (multiple problems)::4 of 13
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,522,119
Total ungapped length1,522,119
Total number of chromosomes and plasmids1

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001543315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010522.1=NZ_CP010522.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,522,119
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