Parus_major1.1

This assembly has been replaced. See current version

Organism name:: Parus major (Great Tit)
Isolate:: Abel
Sex:: male
BioSample:: SAMN03083587
BioProject:: PRJNA208335
Submitter:: Animal Breeding and Genomics Centre, Wageningen University
Date:: 2016/06/30
Release type:: minor
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_001522545.2 (replaced)
RefSeq assembly accession:: GCF_001522545.2 (replaced)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JRXK01
Assembly method:: AllPaths v. April-2013
Expected final version:: yes
Genome coverage:: 95.0x
Sequencing technology:: Illumina HiSeq

IDs: 763951 [UID] 3327108 [GenBank] 3647128 [RefSeq]

See Genome Information for Parus major

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001522545.3	=	GCF_001522545.3	Parus_major1.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_001522545.2	=	GCF_001522545.2	Parus_major1.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_001522545.1	≠	GCF_001522545.1	Parus_major1.0.3	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Assembly Parus_major1.0.3 was updated by placing JRXK01005158 in chromosome 6, inverting chromosome 7 region 22752125 to 34643107, and inverting chromosome 8 region 8096913 to 30905416 to create assembly Parus_major1.1

Global statistics

Total sequence length	1,020,310,768
Total ungapped length	1,002,310,834
Gaps between scaffolds	0
Number of scaffolds	1,675
Scaffold N50	71,365,269
Scaffold L50	5
Number of contigs	24,044
Contig N50	148,693
Contig L50	1,868
Total number of chromosomes and plasmids	33
Number of component sequences (WGS or clone)	24,044

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM003709.1	=	NC_031768.1	0
Chromosome 2	CM003710.1	=	NC_031769.1	0
Chromosome 3	CM003711.1	=	NC_031770.1	0
Chromosome 4	CM003712.1	=	NC_031771.1	0
Chromosome 4A	CM003713.1	=	NC_031772.1	0
Chromosome 1A	CM003714.1	=	NC_031773.1	0
Chromosome 5	CM003715.1	=	NC_031774.1	0
Chromosome 6	CM003716.2	=	NC_031775.1	0
Chromosome 7	CM003717.2	=	NC_031776.1	0
Chromosome 8	CM003718.2	=	NC_031777.1	0
Chromosome 9	CM003719.1	=	NC_031778.1	0
Chromosome 10	CM003720.1	=	NC_031779.1	0
Chromosome 11	CM003721.1	=	NC_031780.1	0
Chromosome 12	CM003722.1	=	NC_031781.1	0
Chromosome 13	CM003723.1	=	NC_031782.1	0
Chromosome 14	CM003724.1	=	NC_031783.1	0
Chromosome 15	CM003725.1	=	NC_031784.1	0
Chromosome 17	CM003726.1	=	NC_031785.1	0
Chromosome 18	CM003727.1	=	NC_031786.1	0
Chromosome 19	CM003728.1	=	NC_031787.1	0
Chromosome 20	CM003729.1	=	NC_031788.1	0
Chromosome 21	CM003730.1	=	NC_031789.1	0
Chromosome 22	CM003731.1	=	NC_031790.1	0
Chromosome 23	CM003732.1	=	NC_031791.1	0
Chromosome 24	CM003733.1	=	NC_031792.1	0
Chromosome 25LG1	CM003734.1	=	NC_031793.1	0
Chromosome 25LG2	CM003735.1	=	NC_031794.1	0
Chromosome 26	CM003736.1	=	NC_031795.1	0
Chromosome 27	CM003737.1	=	NC_031796.1	0
Chromosome 28	CM003738.1	=	NC_031797.1	0
Chromosome Z	CM003740.1	=	NC_031799.1	0
Linkage Group LGE22	CM003739.1	=	NC_031798.1	0
unplaced	n/a	n/a	n/a	1,642

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,020,293,992	1,674	1,002,294,058	71,365,269	22,369
Chromosome 1	114,059,860	1	113,141,998	114,059,860	1,505
Chromosome 2	150,265,477	1	149,048,961	150,265,477	1,837
Chromosome 3	111,636,321	1	110,885,103	111,636,321	1,281
Chromosome 4	68,030,631	1	67,375,280	68,030,631	808
Chromosome 4A	19,934,923	1	19,482,712	19,934,923	710
Chromosome 1A	71,365,269	1	70,703,481	71,365,269	992
Chromosome 5	61,875,929	1	61,060,181	61,875,929	1,111
Chromosome 6	34,342,011	1	33,886,150	34,342,011	646
Chromosome 7	37,653,027	1	37,279,994	37,653,027	593
Chromosome 8	31,324,166	1	30,809,732	31,324,166	666
Chromosome 9	25,106,277	1	24,809,992	25,106,277	526
Chromosome 10	20,202,851	1	19,909,604	20,202,851	382
Chromosome 11	20,315,886	1	20,109,010	20,315,886	418
Chromosome 12	20,466,350	1	20,289,319	20,466,350	387
Chromosome 13	16,480,340	1	16,281,249	16,480,340	384
Chromosome 14	16,193,477	1	15,962,488	16,193,477	415
Chromosome 15	13,820,886	1	13,520,961	13,820,886	471
Chromosome 17	10,486,032	1	10,275,685	10,486,032	379
Chromosome 18	11,572,643	1	11,269,642	11,572,643	485
Chromosome 19	9,871,655	1	9,658,927	9,871,655	332
Chromosome 20	14,661,763	1	14,410,238	14,661,763	438
Chromosome 21	7,693,166	1	7,279,186	7,693,166	508
Chromosome 22	4,276,343	1	3,904,604	4,276,343	439
Chromosome 23	6,655,392	1	5,873,041	6,655,392	712
Chromosome 24	6,808,513	1	6,676,469	6,808,513	264
Chromosome 25LG1	1,092,960	1	1,050,495	1,092,960	83
Chromosome 25LG2	809,223	1	699,565	809,223	101
Chromosome 26	6,596,997	1	6,165,970	6,596,997	608
Chromosome 27	4,327,975	1	4,011,011	4,327,975	310
Chromosome 28	5,101,010	1	4,773,481	5,101,010	401
Chromosome Z	74,514,349	1	73,572,216	74,514,349	1,359
Linkage Group LGE22	773,534	1	729,617	773,534	53
unplaced	21,978,756	1,642	17,387,696	93,770	2,765

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Parus_major1.1

See Genome Information for Parus major

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Assembly Unit Name
Primary Assembly
non-nuclear