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phasIbeam10.0

Organism name:
Phaseolus vulgaris (eudicots)
Infraspecific name:
Cultivar: BAT93
BioSample:
SAMN02364588
BioProject:
PRJNA221782
Submitter:
CRG
Date:
2016/01/22
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001517995.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LPQZ01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
90.0x
Sequencing technology:
454; SOLiD; Sanger

IDs: 628671 [UID] 2828258 [GenBank]

See Genome Information for Phaseolus vulgaris

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length549,748,340
Total ungapped length458,177,155
Gaps between scaffolds1,830
Number of scaffolds68,335
Scaffold N50433,759
Scaffold L50324
Number of contigs111,805
Contig N5010,795
Contig L5012,034
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)111,805

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001518005.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003672.1n/an/a0
Chromosome 2CM003673.1n/an/a0
Chromosome 3CM003674.1n/an/a0
Chromosome 4CM003675.1n/an/a0
Chromosome 5CM003676.1n/an/a0
Chromosome 6CM003677.1n/an/a0
Chromosome 7CM003678.1n/an/a0
Chromosome 8CM003679.1n/an/a0
Chromosome 9CM003680.1n/an/a0
Chromosome 10CM003681.1n/an/a0
Chromosome 11CM003682.1n/an/a0
unplacedn/an/an/a66,494

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All549,748,34068,335458,177,155433,75943,4701,830
Chromosome 144,587,41613037,166,527868,0243,959129
Chromosome 248,029,78219040,833,336621,9354,465189
Chromosome 346,241,27114238,682,444636,6754,517141
Chromosome 439,037,60719329,879,314528,0743,301192
Chromosome 534,257,66216026,833,957416,5522,948159
Chromosome 632,833,6059826,997,396681,3122,95597
Chromosome 743,466,50620535,359,737625,7513,907204
Chromosome 850,710,33622140,662,424526,9704,409220
Chromosome 935,393,11011830,760,809695,4963,600117
Chromosome 1034,772,83718126,141,814433,7592,856180
Chromosome 1141,727,64220330,796,452487,7403,333202
unplaced98,690,56666,49494,062,9451,6963,2200
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