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H105160209

  • Anomalous assembly.
Organism name:
Campylobacter coli (e-proteobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: n/a
Isolate:
H094280625
BioSample:
SAMEA3683491
BioProject:
PRJEB11972
Submitter:
INSTITUTE OF FOOD RESEARCH
Date:
2015/12/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_001491375.1 (latest)
RefSeq assembly accession:
GCF_001491375.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FBQJ01
Genome coverage:
50x

IDs: 607181 [UID] 2761098 [GenBank] 3954478 [RefSeq]

See Genome Information for Campylobacter coli

There are 32241 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,726,767
Total ungapped length1,726,767
Number of contigs80
Contig N50116,253
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)80

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,726,767801,726,767116,25300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter coliCampylobacter coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254135.2Campylobacter coli LMG 9860type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254135.2Campylobacter colitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type93.9185.1279.38
Best-match type93.9185.1279.38

ANI result

Taxonomy check statusBest match statusComment
Failedbelow-threshold-matchna