U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



EC3146

Organism name:
Campylobacter coli (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: n/a
Isolate:
EC3146
BioSample:
SAMEA3683232
BioProject:
PRJEB11972
Submitter:
INSTITUTE OF FOOD RESEARCH
Date:
2015/12/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001489675.1 (latest)
RefSeq assembly accession:
GCF_001489675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FBGF01
Genome coverage:
50x

IDs: 606331 [UID] 2759398 [GenBank] 3804308 [RefSeq]

See Genome Information for Campylobacter coli

There are 32199 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,656,238
Total ungapped length1,656,238
Number of contigs50
Contig N5053,904
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,656,238501,656,23853,90400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter coliCampylobacter coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003590975.1Campylobacter colitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003590975.1Campylobacter colitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5194.5481.86
Best-match type98.5194.5481.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna