Format

Send to:

Choose Destination

Download Assembly



ASM148384v1

Organism name:
Campylobacter coli (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OR12
BioSample:
SAMN04271271
BioProject:
PRJNA302283
Submitter:
University of Nottingham
Date:
2016/01/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_001483845.1 (latest)
RefSeq assembly accession:
GCF_001483845.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC Genomics Workbench v. 8.5.1
Genome coverage:
195x
Sequencing technology:
Illumina MiSeq

IDs: 603391 [UID] 2753098 [GenBank] 2787658 [RefSeq]

See Genome Information for Campylobacter coli

There are 19160 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated using prokka 1.11 from http://www.vicbioinformatics.com
Source bacteria available from Division of Food Sciences, School of Biosciences, University of Nottingham

Global statistics

Total sequence length2,127,266
Total ungapped length2,127,266
Total number of chromosomes and plasmids4

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001483855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP013733.1=NZ_CP013733.1
Plasmid pOR12CC42CP013736.1=NZ_CP013736.1
Plasmid pOR12TETCP013735.1=NZ_CP013735.1
Plasmid pOR12VirCP013734.1=NZ_CP013734.1

Assembly statistics

MoleculeTotal
Length
All2,127,266
Chromosome 2,033,903
Plasmid pOR12CC4227,987
Plasmid pOR12TET27,981
Plasmid pOR12Vir37,395

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter coliCampylobacter coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254135.2Campylobacter coli LMG 9860type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254135.2Campylobacter colitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3179.6191.47
Best-match type98.3179.6191.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center