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B10v3

Organism name:
Cucumis sativus (cucumber)
Infraspecific name:
Cultivar: Borszczagowski
Isolate:
B10
BioSample:
SAMN04103735
BioProject:
PRJNA296786
Submitter:
PCC Genomics - Polish Consortium of Cucumber Genome Sequencing
Date:
2020/04/08
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001483825.3 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LKUO03
Assembly method:
Celera Assembler v. 3.2
Expected final version:
yes
Genome coverage:
69.8x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 6709871 [UID] 18615958 [GenBank]

See Genome Information for Cucumis sativus

There are 14 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length342,288,021
Total ungapped length342,288,021
Number of contigs8,035
Contig N50857,970
Contig L5055
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)8,035

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced342,173,8038,029342,173,803857,97000
MoleculeSequence RoleTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds114,2180114,218606114,2180114,21824,596024,596000000