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Source database (GenBank or RefSeq) File type

ASM147158v2

Organism name:: Vibrio cholerae (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: FDAARGOS_103
BioSample:: SAMN03996320
BioProject:: PRJNA231221
Submitter:: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:: 2018/01/19
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from synonym type material
GenBank assembly accession:: GCA_001471585.2 (latest)
RefSeq assembly accession:: GCF_001471585.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: LOSL02
Assembly method:: Celera v. 8.2
Genome coverage:: 342x
Sequencing technology:: PacBio; Illumina

IDs: 1530331 [UID] 5909058 [GenBank] 5923498 [RefSeq]

See Genome Information for Vibrio cholerae

Pathogen Detection Resources

There are 10116 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001471585.2	=	GCF_001471585.2	ASM147158v2	Contig	Latest GenBank, Latest RefSeq
GCA_001471585.1	=	GCF_001471585.1	ASM147158v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::01/18/2018 13:35:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,783
CDS (total)::3,659
Genes (coding)::3,477
CDS (coding)::3,477
Genes (RNA)::124
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::98
ncRNAs::4
Pseudo Genes (total)::182
Pseudo Genes (ambiguous residues)::0 of 182
Pseudo Genes (frameshifted)::105 of 182
Pseudo Genes (incomplete)::50 of 182
Pseudo Genes (internal stop)::43 of 182
Pseudo Genes (multiple problems)::13 of 182
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,036,048
Total ungapped length	4,036,048
Number of contigs	2
Contig N50	2,902,028
Contig L50	1
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	2

	ANI	Query coverage	Subject coverage
Declared type	97.90	86.84	87.14
Best-match type	97.90	86.84	87.14

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ASM147158v2

See Genome Information for Vibrio cholerae

Pathogen Detection Resources

There are 10116 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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