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Legionella saoudiensis

Organism name:
Legionella saoudiensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LS-1
BioSample:
SAMEA3647790
BioProject:
PRJEB11688
Submitter:
URMITE
Date:
2015/12/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001465875.1 (latest)
RefSeq assembly accession:
GCF_001465875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CZVG01
Genome coverage:
163x

IDs: 594451 [UID] 2722258 [GenBank] 2739568 [RefSeq]

See Genome Information for Legionella saoudiensis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length3,846,294
Total ungapped length3,846,014
Gaps between scaffolds0
Number of scaffolds10
Scaffold N50659,603
Scaffold L502
Number of contigs12
Contig N50659,603
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,846,294103,846,014659,60320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella saoudiensisLegionella saoudiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023921225.1Legionella lyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.1153.7955.79

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected