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ASM145534v1

Organism name:
Bacillus thuringiensis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CTC
BioSample:
SAMN04278951
BioProject:
PRJNA302721
Submitter:
HZAU
Date:
2015/12/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001455345.1 (latest)
RefSeq assembly accession:
GCF_001455345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
ABySS v. 1.9.0 (May 29, 2015)
Reference guided assembly:
GCA_000190515.1
Genome coverage:
150x
Sequencing technology:
Illumina; Sanger

IDs: 589151 [UID] 2701568 [GenBank] 2848838 [RefSeq]

See Genome Information for Bacillus thuringiensis

There are 1330 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source strain/DNA is available from Bacillus Molecular Biology group (609) State Key Lab of Agricultural Microbiology Huazhong Agricultural Univeristy Wuhan, China

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 08:13:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,534
CDSs (total)::5,403
Genes (coding)::5,256
CDSs (with protein)::5,256
Genes (RNA)::131
rRNAs::11, 11, 11 (5S, 16S, 23S)
complete rRNAs::11, 11, 11 (5S, 16S, 23S)
tRNAs::93
ncRNAs::5
Pseudo Genes (total)::147
CDSs (without protein)::147
Pseudo Genes (ambiguous residues)::0 of 147
Pseudo Genes (frameshifted)::70 of 147
Pseudo Genes (incomplete)::79 of 147
Pseudo Genes (internal stop)::44 of 147
Pseudo Genes (multiple problems)::42 of 147
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,352,926
Total ungapped length5,352,926
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001455355.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP013274.1=NZ_CP013274.1
Plasmid unnamedCP013273.1=NZ_CP013273.1

Assembly statistics

MoleculeTotal
Length
All5,352,926
Chromosome 5,327,397
Plasmid unnamed25,529

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus thuringiensisBacillus thuringiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002243685.1Bacillus thuringiensissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030272635.1Bacillus shihchuchentype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.1183.8869.66
Best-match type94.7188.6686.11

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna