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ASM145496v1

Organism name:
Salmonella enterica subsp. enterica serovar Typhimurium (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FORC_020
BioSample:
SAMN03839051
BioProject:
PRJNA288835
Submitter:
Food-borne Pathogen Omics Research Center, FORC
Date:
2015/11/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001454965.1 (latest)
RefSeq assembly accession:
GCF_001454965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC Genomics Workbench v. 7.0.4; PacBio SMRT Analysis v. 2.0
Sequencing technology:
Illumina; PacBio

IDs: 588971 [UID] 2701118 [GenBank] 2715928 [RefSeq]

See Genome Information for Salmonella enterica

There are 526540 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/08/2023 15:08:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,671
CDSs (total)::4,550
Genes (coding)::4,454
CDSs (with protein)::4,454
Genes (RNA)::121
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::84
ncRNAs::15
Pseudo Genes (total)::96
CDSs (without protein)::96
Pseudo Genes (ambiguous residues)::0 of 96
Pseudo Genes (frameshifted)::43 of 96
Pseudo Genes (incomplete)::65 of 96
Pseudo Genes (internal stop)::14 of 96
Pseudo Genes (multiple problems)::23 of 96
Pseudo Genes (short protein)::1 of 96
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,799,793
Total ungapped length4,799,793
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001454975.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012144.1=NZ_CP012144.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,799,793

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar TyphimuriumSalmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900456445.1Salmonella enterica subsp. entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900456445.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9594.7891.51
Best-match type98.9594.7891.51

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna