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Source database (GenBank or RefSeq) File type

ASM144715v2

Organism name:: Marinobacter sp. LQ44 (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: LQ44
BioSample:: SAMN04235750
BioProject:: PRJNA301177
Submitter:: Third Institute of Oceanography, State Oceanic Administration
Date:: 2016/03/21
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_001447155.2 (latest)
RefSeq assembly accession:: GCF_001447155.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SPAdes v. 3.6.2; SOAPdenovo v. 2.04
Genome coverage:: 288x
Sequencing technology:: PacBio; Illumina HiSeq 2000

IDs: 742481 [UID] 3247478 [GenBank] 3404668 [RefSeq]

See Genome Information for Marinobacter sp. LQ44

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001447155.2	=	GCF_001447155.2	ASM144715v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_001447155.1	=	GCF_001447155.1	ASM144715v1	Contig	Replaced GenBank, RefSeq suppressed

Comment

Source DNA is available from Meixian Zhou, Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, No. 184 Daxue Road, Xiamen 361005, PR China
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information ... about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::11/25/2023 01:27:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,085
CDSs (total)::4,022
Genes (coding)::3,962
CDSs (with protein)::3,962
Genes (RNA)::63
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::11 of 60
Pseudo Genes (incomplete)::50 of 60
Pseudo Genes (internal stop)::7 of 60
Pseudo Genes (multiple problems)::7 of 60
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,435,564
Total ungapped length	4,435,564
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	94.64	79.70	76.00

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ASM144715v2

See Genome Information for Marinobacter sp. LQ44

Pathogen Detection Resources

History (Show revision history)

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