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ASM143503v1

Organism name:
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 13343
BioSample:
SAMN02369461
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001435035.1 (latest)
RefSeq assembly accession:
GCF_001435035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZEU01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 578991 [UID] 2582468 [GenBank] 2589508 [RefSeq]

See Genome Information for Lacticaseibacillus manihotivorans

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,125,880
Total ungapped length3,125,178
Gaps between scaffolds0
Number of scaffolds335
Scaffold N5025,801
Scaffold L5038
Number of contigs356
Contig N5023,941
Contig L5041
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)335

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,125,8803353,125,17825,801210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514Lacticaseibacillus manihotivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001311155.1Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001311155.1Lacticaseibacillus manihotivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8198.3295.99
Best-match type99.8198.3295.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna