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Root53

Organism name:
Microbacterium sp. Root53 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Root53
BioSample:
SAMN04155822
BioProject:
PRJNA297942
Submitter:
Max Planck Institute for Plant Breeding Research
Date:
2015/11/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001426925.1 (latest)
RefSeq assembly accession:
GCF_001426925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMFR01
Assembly method:
A5 v. 20140605
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 574911 [UID] 2566908 [GenBank] 2573288 [RefSeq]

See Genome Information for Microbacterium sp. Root53

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2015 11:55:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::2,768
CDS::2,610
Pseudo Genes::108
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::46
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,910,897
Total ungapped length2,910,897
Number of contigs26
Contig N50214,046
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,910,897262,910,897214,04600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Microbacterium sp. Root53Microbacterium sp. Root53

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019753765.1Microbacterium marinilacustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.7544.1533.06

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna