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Root1203

Organism name:
Rhizobium sp. Root1203 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Root1203
BioSample:
SAMN04155696
BioProject:
PRJNA297942
Submitter:
Max Planck Institute for Plant Breeding Research
Date:
2015/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001424945.1 (latest)
RefSeq assembly accession:
GCF_001424945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMCW01
Assembly method:
A5 v. 20140604
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 573921 [UID] 2564928 [GenBank] 2634298 [RefSeq]

See Genome Information for Rhizobium sp. Root1203

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2015 10:55:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::6,489
CDS::6,240
Pseudo Genes::198
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::47
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,705,461
Total ungapped length6,705,444
Gaps between scaffolds0
Number of scaffolds69
Scaffold N50206,116
Scaffold L508
Number of contigs70
Contig N50206,116
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)69

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,705,461696,705,444206,11610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhizobium sp. Root1203Rhizobium sp. Root1203

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014196505.1Rhizobium metalliduranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.3634.6544.86

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna