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Leaf67

Organism name:
Sphingomonas sp. Leaf67 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Leaf67
BioSample:
SAMN04151610
BioProject:
PRJNA297956
Submitter:
Max Planck Institute for Plant Breeding Research
Date:
2015/11/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001421965.1 (latest)
RefSeq assembly accession:
GCF_001421965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMLP01
Assembly method:
A5 v. 20140604
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 572431 [UID] 2561948 [GenBank] 2573348 [RefSeq]

See Genome Information for Sphingomonas sp. Leaf67

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2015 16:52:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,766
CDS::3,645
Pseudo Genes::68
CRISPR Arrays::1
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::49
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,192,908
Total ungapped length4,192,908
Number of contigs25
Contig N50324,035
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,192,908254,192,908324,03500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingomonas sp. Leaf67Sphingomonas sp. Leaf67

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022664465.1Sphingomonas hankookensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.9958.3361.49

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna