U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM141623v1

Organism name:
Acinetobacter baumannii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ABBL138
BioSample:
SAMN04145752
BioProject:
PRJNA297777
Submitter:
Northwestern University Feinberg School of Medicine
Date:
2015/10/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001416235.1 (latest)
RefSeq assembly accession:
GCF_001416235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LLIH01
Assembly method:
Ray v. 1.7
Expected final version:
yes
Genome coverage:
80x
Sequencing technology:
Illumina HiSeq

IDs: 561311 [UID] 2533768 [GenBank] 2597028 [RefSeq]

See Genome Information for Acinetobacter baumannii

There are 26584 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/14/2015 09:21:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,802
CDS::3,555
Pseudo Genes::184
rRNAs::5, 2, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::54
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,902,623
Total ungapped length3,902,623
Number of contigs497
Contig N5017,739
Contig L5070
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)497

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,902,6234973,902,62317,73900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baumanniiAcinetobacter baumannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016746035.1Acinetobacter baumanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016746035.1Acinetobacter baumanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9487.4387.60
Best-match type97.9487.4387.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna