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ASM131612v1

Organism name:
Vulcanisaeta distributa JCM 11213 (crenarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: JCM 11213
BioSample:
SAMD00000514
BioProject:
PRJDB828
Submitter:
The University of Tokyo
Date:
2015/10/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_001316125.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
BBCS01
Assembly method:
Newbler v. 2.8
Genome coverage:
34x
Sequencing technology:
Ion PGM

IDs: 503451 [UID] 2395748 [GenBank]

See Genome Information for Vulcanisaeta distributa

There are 6 assemblies for this organism

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History (Show revision history)

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp/
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

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Global statistics

Total sequence length2,424,311
Total ungapped length2,424,311
Number of contigs28
Contig N50175,817
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,424,311282,424,311175,81700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vulcanisaeta distributa JCM 11213Vulcanisaeta distributa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000148385.1Vulcanisaeta distributa DSM 14429suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000148385.1Vulcanisaeta distributasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.8081.9983.72
Best-match type92.8081.9983.72

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna