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ASM131069v1

Organism name:
Vibrio sp. JCM 19061 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 19061
BioSample:
SAMD00000392
BioProject:
PRJDB1713
Submitter:
The University of Tokyo
Date:
2015/10/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_001310695.1 (latest)
RefSeq assembly accession:
GCF_001310695.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAXU01
Assembly method:
Newbler v. 2.8
Genome coverage:
15x
Sequencing technology:
Ion PGM

IDs: 500661 [UID] 2387388 [GenBank] 2394248 [RefSeq]

See Genome Information for Vibrio sp. JCM 19061

History (Show revision history)

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp/
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

  more

Global statistics

Total sequence length5,079,784
Total ungapped length5,079,784
Number of contigs118
Contig N50124,056
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)118

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,079,7841185,079,784124,05600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio sp. JCM 19061Vibrio sp. JCM 19061

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000467145.1Vibrio alginolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.5093.7294.27

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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