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ASM127713v1

Organism name:
Candidatus Phytoplasma pruni (mycoplasmas)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CX
BioSample:
SAMN03603757
BioProject:
PRJNA283111
Submitter:
Beltsville Agricultural Research Center
Date:
2015/09/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001277135.1 (latest)
RefSeq assembly accession:
GCF_001277135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LHCF01
Assembly method:
Newbler v. 2.9
Expected final version:
yes
Genome coverage:
65.0x
Sequencing technology:
454

IDs: 477741 [UID] 2304518 [GenBank] 2306178 [RefSeq]

See Genome Information for Candidatus Phytoplasma pruni

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length598,511
Total ungapped length598,511
Number of contigs46
Contig N5038,825
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)46

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced598,51146598,51138,82500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Phytoplasma pruniCandidatus Phytoplasma pruni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_032884575.1Candidatus Phytoplasma stylosanthissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.772.522.89

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena