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Salmonella enterica CVM N51276 v1.0

Organism name:
Salmonella enterica subsp. enterica serovar Typhimurium (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CVM N51276
BioSample:
SAMN03894367
BioProject:
PRJNA242614
Submitter:
FDA
Date:
2015/08/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001246705.1 (latest)
RefSeq assembly accession:
GCF_001246705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LHNM01
Assembly method:
CLC Genomics Workbench v. 6.0.2
Genome coverage:
43.5x
Sequencing technology:
Illumina MiSeq

IDs: 460761 [UID] 2103788 [GenBank] 2266708 [RefSeq]

See Genome Information for Salmonella enterica

There are 526504 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2015 01:10:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,897
CDS::4,739
Pseudo Genes::49
CRISPR Arrays::3
rRNAs::7, 3, 6 (5S, 16S, 23S)
complete rRNAs::7 (5S)
partial rRNAs::3, 6 (16S, 23S)
tRNAs::75
ncRNA::18
Frameshifted Genes::22
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,984,122
Total ungapped length4,984,122
Number of contigs79
Contig N50219,869
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)79

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,984,122794,984,122219,86900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar TyphimuriumSalmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9693.3893.99
Best-match type99.9693.3893.99

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna