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ASM108664v1

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BTP037
BioSample:
SAMN03787338
BioProject:
PRJNA287647
Submitter:
The Mayo Clinic
Date:
2015/07/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001086645.1 (latest)
RefSeq assembly accession:
GCF_001086645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LFMU01
Assembly method:
Spades v. 3.1.0; Velvet v. 1.2.10
Genome coverage:
75x
Sequencing technology:
Illumina MiSeq

IDs: 380581 [UID] 1903758 [GenBank] 2090218 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

Pathogen Detection Resources

There are 30416 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Mayo Clinic: Robin Patel 200 First Street SW Rochester MN

Global statistics

Total sequence length6,857,129
Total ungapped length6,857,129
Number of contigs44
Contig N505,465,220
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,857,129446,857,1295,465,22000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001045685.1Pseudomonas aeruginosa DSM 50071 = NBRC 12689type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001045685.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9688.1095.63
Best-match type98.9688.1095.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna