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ASM107314v1

Organism name:
Streptococcus mutans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 503_SMUT
BioSample:
SAMN03197696
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001073145.1 (latest)
RefSeq assembly accession:
GCF_001073145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JVEO01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 373681 [UID] 1885548 [GenBank] 2021518 [RefSeq]

See Genome Information for Streptococcus mutans

Pathogen Detection Resources

There are 478 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length2,007,546
Total ungapped length2,007,428
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50169,969
Scaffold L505
Number of contigs32
Contig N50169,969
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,007,546302,007,428169,96920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus mutansStreptococcus mutans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000347875.1Streptococcus mutans ATCC 25175type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000347875.1Streptococcus mutanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3194.9995.35
Best-match type99.3194.9995.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna