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ASM106393v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 187_KPNE
BioSample:
SAMN03197378
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001063935.1 (latest)
RefSeq assembly accession:
GCF_001063935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JVQU01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
28x
Sequencing technology:
Illumina HiSeq

IDs: 369061 [UID] 1876308 [GenBank] 2002298 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65265 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length5,083,283
Total ungapped length5,083,183
Gaps between scaffolds0
Number of scaffolds112
Scaffold N50107,762
Scaffold L5018
Number of contigs113
Contig N50107,762
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)112

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,083,2831125,083,183107,76210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000281755.1Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000281755.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1991.9584.79
Best-match type99.1991.9584.79

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna