U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM106274v1

Organism name:
Proteus mirabilis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1330_PMIR
BioSample:
SAMN03197311
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001062745.1 (latest)
RefSeq assembly accession:
GCF_001062745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JVTJ01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
25x
Sequencing technology:
Illumina HiSeq

IDs: 368481 [UID] 1875138 [GenBank] 2009118 [RefSeq]

See Genome Information for Proteus mirabilis

Pathogen Detection Resources

There are 3629 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length3,959,165
Total ungapped length3,958,965
Gaps between scaffolds0
Number of scaffolds168
Scaffold N5059,923
Scaffold L5021
Number of contigs170
Contig N5059,923
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)168

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,959,1651683,958,96559,92320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Proteus mirabilisProteus mirabilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160755.1Proteus mirabilis ATCC 29906type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000160755.1Proteus mirabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3692.9992.62
Best-match type99.3692.9992.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna