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ASM105588v1

Organism name:
Haemophilus parainfluenzae (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 209_HPAR
BioSample:
SAMN03197401
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001055885.1 (latest)
RefSeq assembly accession:
GCF_001055885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JVPX01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
28x
Sequencing technology:
Illumina HiSeq

IDs: 365041 [UID] 1868268 [GenBank] 2016198 [RefSeq]

See Genome Information for Haemophilus parainfluenzae

Pathogen Detection Resources

There are 271 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length1,997,176
Total ungapped length1,997,076
Gaps between scaffolds0
Number of scaffolds23
Scaffold N50203,956
Scaffold L503
Number of contigs24
Contig N50203,956
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)23

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,997,176231,997,076203,95610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus parainfluenzaeHaemophilus parainfluenzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000746485.1Haemophilus parainfluenzae ATCC 33392suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000746485.1Haemophilus parainfluenzaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.4490.7884.87
Best-match type94.4490.7884.87

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna